PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00592
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 295aa    MW: 34076.4 Da    PI: 5.667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00592genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.7e-16159248198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+k +++s+v+   +l lp +f++ h ++k+ + ++tl de+ +++  k+  +k++    l++GW++F+ +++L +gD +vF+l   ++f  +v ++r
  AA26G00592 159 FIKSMLQSHVTGGFWLGLPLHFCKIH-LPKH-DEMITLIDEEDEEFVTKYLSEKNG----LSGGWRGFAMDHHLVDGDAIVFHLLTPTTF--KVYIIR 248
                 89*********************655.5554.459***************656665....***********************8765555..777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-19150248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-24152248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-25157248No hitNo description
PROSITE profilePS5086311.265159250IPR003340B3 DNA binding domain
SMARTSM010196.5E-20159250IPR003340B3 DNA binding domain
PfamPF023621.2E-13159248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVESELSYEQ IRLKRVEENK KRMEELNLNK LAQSLRVSSS SPKPSPVSFF FLFSLLFNIF  60
TGFHGNAGQT KDTTLPGELL GGQKVKPCEE SSSELQRELF NHFLYSYLQP GLDPLERPRR  120
SYQRRDLLNR IYASDEARMY AIEKAEQIQS SLDSDFPSFI KSMLQSHVTG GFWLGLPLHF  180
CKIHLPKHDE MITLIDEEDE EFVTKYLSEK NGLSGGWRGF AMDHHLVDGD AIVFHLLTPT  240
TFKVYIIRVY EEDGKNRDGN EDKENETESN EKEEENVSEV RELRSSGKRK RGGRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507495.11e-118PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ1G3M31e-102Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLV4JPP51e-117V4JPP5_EUTSA; Uncharacterized protein
STRINGBra035129.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-71B3 family protein